PlantPromoterDB promoter information of AT4G37870
Summary of Gene (AT4G37870)
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Overview
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Focused view (chromosome 4: 17807332-17806133)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G37870 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G37870
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 151 | - | 17806536 | -204 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 17806539 | -207 |
| TSS clone | C | clone | - | 17806537 | -205 |
| TSS clone | G | clone | - | 17806536 | -204 |
| TSS clone | C | clone | - | 17806535 | -203 |
| TSS clone | A | clone | - | 17806534 | -202 |
| TSS clone | T | clone | - | 17806533 | -201 |
| TSS clone | T | clone | - | 17806530 | -198 |
| TSS clone | T | clone | - | 17806523 | -191 |
| TSS clone | T | clone | - | 17806483 | -151 |
| TSS clone | A | clone | - | 17806471 | -139 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCCTCC | - | 17806489 | 17806499 | -157 | -167 |
| Y Patch | CTTCTCTTC | - | 17806543 | 17806551 | -211 | -219 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGGTTAT | - | 17806680 | 17806688 | -348 | -356 | |||
| AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||