Summary of Gene (AT4G38090.3)
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Overview |
Genome position
from initiation codon AT4G38090.2 TSS from cDNA TSS information AT4G38090.3 5'->3' (-) Promoter sequence AT4G38092.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 17884740 | -38 |
TSS clone peak | A | clone | - | 17884726 | -24 |
TSS clone | A | clone | - | 17884710 | -8 |
TSS clone | A | clone | - | 17884707 | -5 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCGAACC | - | 17884817 | 17884824 | -115 | -122 | |||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCAAACCG | - | 17884856 | 17884863 | -154 | -161 | |||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CGCGTGAA | - | 17884898 | 17884905 | -196 | -203 | |||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | AGCGCGTGA | - | 17884981 | 17884989 | -279 | -287 | |||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |