PlantPromoterDB promoter information of AT4G38092.1

Summary of Gene (AT4G38092.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G38092 TAIR NCBI
Gene model	AT4G38092.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 73 Blast hits to 73 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 17884340-17885539)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G38092.1 5'->3' (+) Promoter sequence AT4G38090.1 AT4G38090.2 AT4G38090.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G38092.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 17884740 AT4G38090.1, AT4G38090.2, AT4G38090.3

TSS clone peak A clone - 17884726 AT4G38090.1, AT4G38090.2, AT4G38090.3

TSS clone A clone - 17884710 AT4G38090.1, AT4G38090.2, AT4G38090.3

TSS clone A clone - 17884707 AT4G38090.1, AT4G38090.2, AT4G38090.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	17884740	AT4G38090.1, AT4G38090.2, AT4G38090.3
TSS clone peak	`A`	clone	-	17884726	AT4G38090.1, AT4G38090.2, AT4G38090.3
TSS clone	`A`	clone	-	17884710	AT4G38090.1, AT4G38090.2, AT4G38090.3
TSS clone	`A`	clone	-	17884707	AT4G38090.1, AT4G38090.2, AT4G38090.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACCGAACC - 17884817 17884824 AT4G38090.1, AT4G38090.2, AT4G38090.3

AtREG451 ACCGAACC PPDB Motif PLACE Motif

REG CCAAACCG - 17884856 17884863 AT4G38090.1, AT4G38090.2, AT4G38090.3

AtREG550 CCAAACCG PPDB Motif AACCG(G/A) PLACE Motif

REG CGCGTGAA - 17884898 17884905 AT4G38090.1, AT4G38090.2, AT4G38090.3

AtREG631 CGCGTGAA Drought PPDB Motif PLACE Motif

REG AGCGCGTGA - 17884981 17884989 AT4G38090.1, AT4G38090.2, AT4G38090.3

AtREG381 AGCGCGTG PPDB Motif ACGCGC PLACE Motif

AtREG395 GCGCGTGA PPDB Motif ACGCGC PLACE Motif