Summary of Gene (AT4G38470)
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Overview |
Genome position
from initiation codon AT4G38460.1 TSS from cDNA TSS information AT4G38470 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 23 | + | 17999203 | -229 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 17999154 | -278 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCTC | + | 17999213 | 17999220 | -219 | -212 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGGTTTAA | + | 17998946 | 17998954 | -486 | -478 | |||
AtREG652 | ACGGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TCGCCACG | + | 17999080 | 17999087 | -352 | -345 | |||
AtREG471 | TCGCCACG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | CGTCGTTTT | + | 17999120 | 17999128 | -312 | -304 | |||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 20 | + | 17994785 | AT4G38460.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 17994801 | AT4G38460.1 |
TSS clone | A | clone | + | 17994811 | AT4G38460.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCATATAT | + | 17994749 | 17994756 | AT4G38460.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GACGTGTCT | + | 17994726 | 17994734 | AT4G38460.1 | ||||
AtREG481 | GACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG470 | ACGTGTCT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  |