PlantPromoterDB promoter information of AT4G38740
Summary of Gene (AT4G38740)
|
Overview
|
Focused view (chromosome 4: 18085138-18083939)
|
Genome position
from initiation codon AT4G38750.1 TSS from cDNA TSS information AT4G38740 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G38740
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 100 | - | 18084202 | -64 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 18084268 | -130 |
| TSS clone | T | clone | - | 18084257 | -119 |
| TSS clone | G | clone | - | 18084251 | -113 |
| TSS clone | G | clone | - | 18084241 | -103 |
| TSS clone | T | clone | - | 18084201 | -63 |
| TSS clone | T | clone | - | 18084197 | -59 |
| TSS clone | A | clone | - | 18084195 | -57 |
| TSS clone | T | clone | - | 18084194 | -56 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGCTATAAATC | - | 18084227 | 18084237 | -89 | -99 |
| Y Patch | CCTCTTCTTC | - | 18084174 | 18084183 | -36 | -45 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTAAAGCC | - | 18084303 | 18084310 | -165 | -172 | |||
| AtREG545 | TTAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CGGTTAAG | - | 18084314 | 18084321 | -176 | -183 | |||
| AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | CTTAACCGGT | - | 18084344 | 18084353 | -206 | -215 | |||
| AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | TTAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | GGACACGTGTG | - | 18084422 | 18084432 | -284 | -294 | |||
| AtREG472 | GGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||