Summary of Gene (AT4G38840)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G38840 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 21 | - | 18125527 | -54 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 18125558 | -85 |
TSS clone | A | clone | - | 18125524 | -51 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTATATATAC | - | 18125552 | 18125562 | -79 | -89 |
Y Patch | CTCCTTTC | - | 18125534 | 18125541 | -61 | -68 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAGGGCCC | - | 18125674 | 18125681 | -201 | -208 | |||
AtREG387 | TAGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 21 | - | 18119043 | AT4G38810.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 18119043 | AT4G38810.2 |
TSS clone | A | clone | - | 18119037 | AT4G38810.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CATATAAAGA | - | 18119066 | 18119075 | AT4G38810.2 | |
TATA Box | CTTCTATA | - | 18119078 | 18119085 | AT4G38810.2 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |