Summary of Gene (AT4G38860.1)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G38860.1 5'->3' (+) Promoter sequence AT4G38820.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | + | 18130271 | -86 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 18130269 | -88 |
TSS clone | A | clone | + | 18130272 | -85 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCCTC | + | 18130229 | 18130236 | -128 | -121 |
Y Patch | CCTCTCTCTCAT | + | 18130258 | 18130269 | -99 | -88 |
Y Patch | TTCTCCTC | + | 18130298 | 18130305 | -59 | -52 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 18121525 | AT4G38830.1, AT4G38825.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 18121526 | AT4G38830.1, AT4G38825.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTGTATATATATATT | + | 18121488 | 18121502 | AT4G38825.1, AT4G38830.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGTCCCAC | + | 18121250 | 18121257 | AT4G38825.1, AT4G38830.1 | ||||
AtREG406 | GGTCCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | GAAGCCCAC | + | 18121453 | 18121461 | AT4G38825.1, AT4G38830.1 | ||||
AtREG476 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG518 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |