PlantPromoterDB promoter information of AT4G39090
Summary of Gene (AT4G39090)
|
Overview
|
Focused view (chromosome 4: 18210626-18209427)
|
Genome position
from initiation codon TSS from cDNA TSS information AT4G39090 5'->3' (-) Promoter sequence AT4G39080.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G39090
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 281 | - | 18217335 | -9 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 18217481 | -155 |
| TSS clone | A | clone | - | 18217392 | -66 |
| TSS clone | C | clone | - | 18217384 | -58 |
| TSS clone | A | clone | - | 18217381 | -55 |
| TSS clone | A | clone | - | 18217344 | -18 |
| TSS clone | C | clone | - | 18217341 | -15 |
| TSS clone | A | clone | - | 18217339 | -13 |
| TSS clone | A | clone | - | 18217338 | -12 |
| TSS clone | T | clone | - | 18217337 | -11 |
| TSS clone | G | clone | - | 18217335 | -9 |
| TSS clone | C | clone | - | 18217334 | -8 |
| TSS clone | A | clone | - | 18217333 | -7 |
| TSS clone | A | clone | - | 18217332 | -6 |
| TSS clone | A | clone | - | 18217331 | -5 |
| TSS clone | A | clone | - | 18217328 | -2 |
| TSS clone | A | clone | - | 18217327 | -1 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCCTTC | - | 18217345 | 18217352 | -19 | -26 |
| Y Patch | TCCTTCTCT | - | 18217354 | 18217362 | -28 | -36 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAACCGAA | - | 18217465 | 18217472 | -139 | -146 | |||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACACGTGGT | - | 18217611 | 18217620 | -285 | -294 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 18209430 | AT4G39080.1 |
| TSS clone | A | clone | + | 18209432 | AT4G39080.1 |
| TSS clone | T | clone | + | 18209433 | AT4G39080.1 |
| TSS clone | T | clone | + | 18209436 | AT4G39080.1 |
| TSS clone | A | clone | + | 18209438 | AT4G39080.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||