PlantPromoterDB promoter information of AT4G39100.1
Summary of Gene (AT4G39100.1)
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Overview
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Focused view (chromosome 4: 18221134-18219935)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G39100.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G39100.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 23 | - | 18220166 | -32 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 18220204 | -70 |
| TSS clone | G | clone | - | 18220173 | -39 |
| TSS clone | A | clone | - | 18220172 | -38 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCTGACGTGG | - | 18220363 | 18220372 | -229 | -238 | |||
| AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| REG | ACACGCGCTT | - | 18220383 | 18220392 | -249 | -258 | |||
| AtREG385 | ACACGCGC | PPDB Motif | ACGCGC | PLACE Motif | ACACNNG | ||||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | TACGTGGCT | - | 18220443 | 18220451 | -309 | -317 | |||
| AtREG413 | TACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG450 | ACGTGGCT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||