Summary of Gene (AT4G39130.1)
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Overview |
Genome position
from initiation codon AT4G39100.1 TSS from cDNA TSS information AT4G39130.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 18217481 | AT4G39090.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAACCGAA | - | 18217465 | 18217472 | AT4G39090.1 | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AACACGTGGT | - | 18217611 | 18217620 | AT4G39090.1 | ||||
AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |