Summary of Gene (AT4G39130.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G39130.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 23 | - | 18220166 | AT4G39100.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 18220204 | AT4G39100.1 |
TSS clone | G | clone | - | 18220173 | AT4G39100.1 |
TSS clone | A | clone | - | 18220172 | AT4G39100.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GCTGACGTGG | - | 18220363 | 18220372 | AT4G39100.1 | ||||
AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
REG | ACACGCGCTT | - | 18220383 | 18220392 | AT4G39100.1 | ||||
AtREG385 | ACACGCGC | PPDB Motif | ACGCGC  | PLACE Motif | ACACNNG  | ||||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | TACGTGGCT | - | 18220443 | 18220451 | AT4G39100.1 | ||||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG450 | ACGTGGCT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  |