PlantPromoterDB promoter information of AT4G39130.1

Summary of Gene (AT4G39130.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G39130 TAIR NCBI
Gene model	AT4G39130.1
Description	dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: LEA (DEHYDRIN LEA) (TAIR:AT2G21490.1); Has 149 Blast hits to 134 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 18232244-18231045)

`Genome position from initiation codon` `AT4G39140.1 AT4G39140.2 AT4G39140.3 AT4G39140.4 AT4G39140.5 TSS from cDNA TSS information AT4G39130.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G39130.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 - 18232041 AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	-	18232041	AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 18232051 AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	18232051	AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTCTCTCTCTCT - 18232051 18232068 AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

Y Patch TCTCTTTCCCTCTCTTC - 18232070 18232086 AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTCTCTCTCTCT`	-	18232051	18232068	AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5
Y Patch	`TCTCTTTCCCTCTCTTC`	-	18232070	18232086	AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTAAACCGTCAGA - 18232102 18232114 AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

AtREG519 GTAAACCG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG652 TAAACCGT     PPDB Motif PLACE Motif

AtREG625     ACCGTCAG PPDB Motif PLACE Motif

AtREG622      CCGTCAGA PPDB Motif PLACE Motif

REG TTCGGTTT - 18232205 18232212 AT4G39140.1, AT4G39140.2, AT4G39140.3, AT4G39140.4, AT4G39140.5

AtREG568 TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif