Summary of Gene (AT4G39350)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G39350 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 18296452 | -626 |
TSS peak | A | 2 | + | 18296705 | -373 |
TSS peak | A | 8 | + | 18296985 | -93 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCCTCTT | + | 18296476 | 18296483 | -602 | -595 |
Y Patch | TCTCTCTCAT | + | 18296657 | 18296666 | -421 | -412 |
Y Patch | CGTCTTCC | + | 18296938 | 18296945 | -140 | -133 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCGTCGTTTT | + | 18296526 | 18296535 | -552 | -543 | |||
AtREG439 | GCGTCGTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGACCCAC | + | 18296540 | 18296548 | -538 | -530 | |||
AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC  | PLACE Motif |   | |||
AtREG523 | GGACCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CGTGACGT | + | 18296555 | 18296562 | -523 | -516 | |||
AtREG489 | CGTGACGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | TCAGGGGT | + | 18296634 | 18296641 | -444 | -437 | |||
AtREG595 | TCAGGGGT | CK | PPDB Motif | ACCCCT  | PLACE Motif |   | |||
REG | TTCGGTTTAT | + | 18296917 | 18296926 | -161 | -152 | |||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |