PlantPromoterDB promoter information of AT4G39350
Summary of Gene (AT4G39350)
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Overview
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Focused view (chromosome 4: 18296078-18297277)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G39350 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G39350
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | + | 18296452 | -626 |
| TSS peak | A | 2 | + | 18296705 | -373 |
| TSS peak | A | 8 | + | 18296985 | -93 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCTCTT | + | 18296476 | 18296483 | -602 | -595 |
| Y Patch | TCTCTCTCAT | + | 18296657 | 18296666 | -421 | -412 |
| Y Patch | CGTCTTCC | + | 18296938 | 18296945 | -140 | -133 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCGTCGTTTT | + | 18296526 | 18296535 | -552 | -543 | |||
| AtREG439 | GCGTCGTT | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | GGGACCCAC | + | 18296540 | 18296548 | -538 | -530 | |||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CGTGACGT | + | 18296555 | 18296562 | -523 | -516 | |||
| AtREG489 | CGTGACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | TCAGGGGT | + | 18296634 | 18296641 | -444 | -437 | |||
| AtREG595 | TCAGGGGT | CK | PPDB Motif | ACCCCT | PLACE Motif | ||||
| REG | TTCGGTTTAT | + | 18296917 | 18296926 | -161 | -152 | |||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||