PlantPromoterDB promoter information of AT4G39990.1
Summary of Gene (AT4G39990.1)
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Overview
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Focused view (chromosome 4: 18541722-18542921)
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Genome position
from initiation codon AT4G39985 AT4G39985.1 TSS from cDNA TSS information AT4G39990.1 5'->3' (+) Promoter sequence AT4G39985.1
AT4G39986.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G39990.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 18542566 | -156 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 18542563 | -159 |
| TSS clone | G | clone | + | 18542567 | -155 |
| TSS clone | A | clone | + | 18542637 | -85 |
| TSS clone | C | clone | + | 18542640 | -82 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGGACCC | + | 18542312 | 18542319 | -410 | -403 | |||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TCACGTGTT | + | 18542429 | 18542437 | -293 | -285 | |||
| AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | TTCCACGTGTCAT | + | 18542453 | 18542465 | -269 | -257 | |||
| AtREG627 | TTCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||