PlantPromoterDB promoter information of AT4G40030
Summary of Gene (AT4G40030)
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Overview
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Focused view (chromosome 4: 18557417-18556218)
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Genome position
from initiation codon AT4G40030.2 AT4G40030.3 AT4G40040.1 AT4G40040.2 TSS from cDNA TSS information AT4G40030 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G40030
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 93 | - | 18556970 | -553 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 18557479 | -1062 |
| TSS clone | C | clone | - | 18556971 | -554 |
| TSS clone | A | clone | - | 18556970 | -553 |
| TSS clone | A | clone | - | 18556969 | -552 |
| TSS clone | C | clone | - | 18556965 | -548 |
| TSS clone | C | clone | - | 18556931 | -514 |
| TSS clone | A | clone | - | 18556928 | -511 |
| TSS clone | A | clone | - | 18556925 | -508 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTATAAATA | - | 18556995 | 18557003 | -578 | -586 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGAACCG | - | 18557063 | 18557070 | -646 | -653 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTTGGGCT | - | 18557099 | 18557106 | -682 | -689 | |||
| AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||