PlantPromoterDB promoter information of AT5G01040
Summary of Gene (AT5G01040)
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Overview
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Focused view (chromosome 5: 8442-7243)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G01040 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G01040
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 16173 | -31 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 16173 | -31 |
| TSS clone | C | clone | - | 16172 | -30 |
| TSS clone | A | clone | - | 16170 | -28 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTCTATAAATA | - | 16198 | 16208 | -56 | -66 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACGACGT | - | 16300 | 16307 | -158 | -165 | |||
| AtREG493 | AACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 13 | - | 8403 | AT5G01020.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | - | 8415 | AT5G01020.1 |
| TSS clone | C | clone | - | 8410 | AT5G01020.1 |
| TSS clone | G | clone | - | 8397 | AT5G01020.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||