PlantPromoterDB promoter information of AT5G01410
Summary of Gene (AT5G01410)
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Overview
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Focused view (chromosome 5: 174505-173306)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G01410 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G01410
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 97 | - | 173575 | -70 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 173624 | -119 |
| TSS clone | T | clone | - | 173608 | -103 |
| TSS clone | A | clone | - | 173607 | -102 |
| TSS clone | G | clone | - | 173579 | -74 |
| TSS clone | C | clone | - | 173577 | -72 |
| TSS clone | A | clone | - | 173575 | -70 |
| TSS clone | G | clone | - | 173574 | -69 |
| TSS clone | A | clone | - | 173560 | -55 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATAAAGC | - | 173603 | 173613 | -98 | -108 |
| Y Patch | TCTCTCTTCC | - | 173542 | 173551 | -37 | -46 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTCCGA | - | 173748 | 173755 | -243 | -250 | |||
| AtREG594 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||