PlantPromoterDB promoter information of AT5G01600
Summary of Gene (AT5G01600)
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Overview
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Focused view (chromosome 5: 230594-229395)
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Genome position
from initiation codon AT5G01600.1 TSS from cDNA TSS information AT5G01600 5'->3' (-) Promoter sequence AT5G01595
AT5G01595.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G01600
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 87 | - | 229660 | -66 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 229663 | -69 |
| TSS clone | T | clone | - | 229662 | -68 |
| TSS clone | A | clone | - | 229660 | -66 |
| TSS clone | T | clone | - | 229659 | -65 |
| TSS clone | C | clone | - | 229658 | -64 |
| TSS clone | T | clone | - | 229656 | -62 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTCTTATATAAACC | - | 229684 | 229697 | -90 | -103 |
| Y Patch | CCTTCCTCCTTCCTCTTTCT | - | 229665 | 229684 | -71 | -90 |
| Y Patch | TTCCCTCT | - | 229694 | 229701 | -100 | -107 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCAACGG | - | 229716 | 229724 | -122 | -130 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | TCCACGTGGAT | - | 229729 | 229739 | -135 | -145 | |||
| AtREG408 | TCCACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ACGTGGAT | - | 229823 | 229830 | -229 | -236 | |||
| AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | GAACCGGAAA | - | 229899 | 229908 | -305 | -314 | |||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||