PlantPromoterDB promoter information of AT5G01820
Summary of Gene (AT5G01820)
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Overview
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Focused view (chromosome 5: 315751-314552)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G01820 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G01820
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 315004 | -253 |
| TSS clone | A | clone | - | 315000 | -249 |
| TSS clone | T | clone | - | 314999 | -248 |
| TSS clone peak | T | clone | - | 314992 | -241 |
| TSS clone | A | clone | - | 314903 | -152 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATATATG | - | 315027 | 315034 | -276 | -283 |
| Y Patch | TCTCTCTTT | - | 314961 | 314969 | -210 | -218 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATACCCT | - | 315058 | 315066 | -307 | -315 | |||
| AtREG602 | AAATACCC | PPDB Motif | PLACE Motif | ||||||
| AtREG567 | AATACCCT | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||