PlantPromoterDB promoter information of AT5G02470.3
Summary of Gene (AT5G02470.3)
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Overview
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Focused view (chromosome 5: 545423-544224)
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Genome position
from initiation codon AT5G02470.2 TSS from cDNA TSS information AT5G02470.3 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G02470.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 5 | - | 544808 | -385 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 544900 | -477 |
| TSS clone | T | clone | - | 544899 | -476 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGATGGGCTA | - | 544912 | 544921 | -489 | -498 | |||
| AtREG635 | TGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG581 | ATGGGCTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | AAAACGACACC | - | 544978 | 544988 | -555 | -565 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | AACGACAC | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| AtREG599 | ACGACACC | PPDB Motif | PLACE Motif | ||||||
| REG | AAAAGGCCCATTTA | - | 545008 | 545021 | -585 | -598 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTAGCCCAAC | - | 545046 | 545055 | -623 | -632 | |||
| AtREG571 | TTAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||