PlantPromoterDB promoter information of AT5G02970.1

Summary of Gene (AT5G02970.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G02970 TAIR NCBI
Gene model	AT5G02970.1
Description	hydrolase, alpha/beta fold family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT3G09690.2); Has 537 Blast hits to 531 proteins in 131 species: Archae - 2; Bacteria - 272; Metazoa - 8; Fungi - 13; Plants - 197; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 694391-695590)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G02970.1 5'->3' (+) Promoter sequence AT5G02960.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G02970.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 694979 -412

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	694979	-412

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 694969 -422

TSS clone G clone + 694982 -409

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	694969	-422
TSS clone	`G`	clone	+	694982	-409

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GAACCGGC + 694768 694775 -623 -616

AtREG637 GAACCGGC PPDB Motif AACCG(G/A) PLACE Motif

REG CTTAACCG + 694849 694856 -542 -535

AtREG605 CTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG ACGTGGAC + 694876 694883 -515 -508

AtREG513 ACGTGGAC ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GAACCGGC`		+	694768	694775	-623	-616
	AtREG637	`GAACCGGC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTTAACCG`		+	694849	694856	-542	-535
	AtREG605	`CTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`ACGTGGAC`		+	694876	694883	-515	-508
	AtREG513	`ACGTGGAC`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 161 - 694485 AT5G02960.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	161	-	694485	AT5G02960.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 694485 AT5G02960.1

TSS clone G clone - 694484 AT5G02960.1

TSS clone G clone - 694483 AT5G02960.1

TSS clone G clone - 694482 AT5G02960.1

TSS clone T clone - 694481 AT5G02960.1

TSS clone G clone - 694473 AT5G02960.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	694485	AT5G02960.1
TSS clone	`G`	clone	-	694484	AT5G02960.1
TSS clone	`G`	clone	-	694483	AT5G02960.1
TSS clone	`G`	clone	-	694482	AT5G02960.1
TSS clone	`T`	clone	-	694481	AT5G02960.1
TSS clone	`G`	clone	-	694473	AT5G02960.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGATGGGCCAA - 694553 694563 AT5G02960.1

AtREG635 TGATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG403 GATGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490   ATGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484    TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG CTTAATGGGCCTAC - 694568 694581 AT5G02960.1

AtREG604 CTTAATGG       PPDB Motif PLACE Motif TTAATGG

AtREG396 TTAATGGG      PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357   TAATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG361    AATGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354     ATGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358      TGGGCCTA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG435       GGGCCTAC PPDB Motif GCCCA PLACE Motif GGGCC

REG TAAAAGCCCAT - 694584 694594 AT5G02960.1

AtREG549 TAAAAGCC    PPDB Motif PLACE Motif

AtREG409 AAAAGCCC   PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

REG TAAAAGCCCAAAA - 694632 694644 AT5G02960.1

AtREG549 TAAAAGCC      PPDB Motif PLACE Motif

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469     AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG529      GCCCAAAA PPDB Motif GCCCA PLACE Motif

REG ATCCAACGGTTTAG - 694656 694669 AT5G02960.1

AtREG586 ATCCAACG       PPDB Motif CCAACGG PLACE Motif

AtREG554 TCCAACGG      PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

AtREG652      ACGGTTTA PPDB Motif PLACE Motif

AtREG511       CGGTTTAG PPDB Motif AACCG(G/A) PLACE Motif

REG GCCGGTTC - 694768 694775 AT5G02960.1

AtREG637 GCCGGTTC PPDB Motif AACCG(G/A) PLACE Motif