Summary of Gene (AT5G03560.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G03560.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 902741 | -22 |
TSS clone peak | C | clone | - | 902734 | -15 |
TSS clone | T | clone | - | 902731 | -12 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCCC | - | 902732 | 902740 | -13 | -21 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAACGCGTAAACGGCGCGT | - | 902796 | 902814 | -77 | -95 | |||
AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG613 | TAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG524 | AAACGGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG538 | CGGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AAAACGGCA | - | 902824 | 902832 | -105 | -113 | |||
AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TAAACGGCACG | - | 902853 | 902863 | -134 | -144 | |||
AtREG613 | TAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG522 | ACGGCACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GACCCGAA | - | 902867 | 902874 | -148 | -155 | |||
AtREG597 | GACCCGAA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TATATGGGCCGAA | - | 902878 | 902890 | -159 | -171 | |||
AtREG620 | TATATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG432 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG393 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG427 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TAAATGGGCTA | - | 902893 | 902903 | -174 | -184 | |||
AtREG443 | TAAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG581 | ATGGGCTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | ATCCACGT | - | 902917 | 902924 | -198 | -205 | |||
AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | CTAATGGG | - | 902973 | 902980 | -254 | -261 | |||
AtREG558 | CTAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 13 | + | 903708 | AT5G03570.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAAACGACGA | + | 903577 | 903586 | AT5G03570.1 | ||||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG648 | AACGACGA | PPDB Motif |   | PLACE Motif |   |