PlantPromoterDB promoter information of AT5G03850.1
Summary of Gene (AT5G03850.1)
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Overview
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Focused view (chromosome 5: 1029736-1028537)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G03850.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G03850.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 1029106 | -370 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 1029119 | -383 |
| TSS clone | T | clone | - | 1029117 | -381 |
| TSS clone | T | clone | - | 1029115 | -379 |
| TSS clone | G | clone | - | 1029114 | -378 |
| TSS clone | T | clone | - | 1029113 | -377 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAAT | - | 1029144 | 1029151 | -408 | -415 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGGCCTATA | - | 1029148 | 1029156 | -412 | -420 | |||
| AtREG649 | AGGCCTAT | PPDB Motif | PLACE Motif | ||||||
| AtREG487 | GGCCTATA | PPDB Motif | PLACE Motif | ||||||
| REG | TTGAACCGGCTGGGC | - | 1029219 | 1029233 | -483 | -497 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG637 | GAACCGGC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG454 | GGCTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAACGCC | - | 1029350 | 1029357 | -614 | -621 | |||
| AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||