PlantPromoterDB promoter information of AT5G04720.1

Summary of Gene (AT5G04720.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G04720 TAIR NCBI
Gene model	AT5G04720.1
Description	ADR1-like 2 (ADR1-L2); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Disease resistance, plant (InterPro:IPR014011), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ADR1-L1 (ADR1-like 1); ATP binding / protein binding (TAIR:AT4G33300.2); Has 16716 Blast hits to 11049 proteins in 439 species: Archae - 24; Bacteria - 1102; Metazoa - 2478; Fungi - 82; Plants - 12542; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 1359748-1360947)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G04720.1 5'->3' (+) Promoter sequence AT5G04710.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G04720.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 21 + 1360678 -70

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	21	+	1360678	-70

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 1360670 -78

TSS clone T clone + 1360672 -76

TSS clone T clone + 1360679 -69

TSS clone C clone + 1360682 -66

TSS clone C clone + 1360687 -61

TSS clone A clone + 1360712 -36

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	1360670	-78
TSS clone	`T`	clone	+	1360672	-76
TSS clone	`T`	clone	+	1360679	-69
TSS clone	`C`	clone	+	1360682	-66
TSS clone	`C`	clone	+	1360687	-61
TSS clone	`A`	clone	+	1360712	-36

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCCT + 1360687 1360694 -61 -54

Y Patch TTTCTTCTCTCC + 1360700 1360711 -48 -37

Y Patch TCTCTCTCTC + 1360717 1360726 -31 -22

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCCT`	+	1360687	1360694	-61	-54
Y Patch	`TTTCTTCTCTCC`	+	1360700	1360711	-48	-37
Y Patch	`TCTCTCTCTC`	+	1360717	1360726	-31	-22
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGCGTGT + 1360442 1360449 -306 -299

AtREG536 ACGCGTGT ABA, Drought PPDB Motif PLACE Motif ACACNNG

REG GACGTGTCT + 1360454 1360462 -294 -286

AtREG481 GACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG470 ACGTGTCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG TATTGGGCCTTAT + 1360468 1360480 -280 -268

AtREG355 TATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352 ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351     GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG425      GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG CTTGGGCCTTAT + 1360500 1360511 -248 -237

AtREG505 CTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356 TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353   TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351    GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG425     GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG TTATTGGG + 1360565 1360572 -183 -176

AtREG417 TTATTGGG PPDB Motif GCCCA PLACE Motif

REG TTAATGGG + 1360615 1360622 -133 -126

AtREG396 TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGCGTGT`		+	1360442	1360449	-306	-299
	AtREG536	`ACGCGTGT`	ABA, Drought	PPDB Motif		PLACE Motif	`ACACNNG`
REG	`GACGTGTCT`		+	1360454	1360462	-294	-286
	AtREG481	`GACGTGTC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG470	`ACGTGTCT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`TATTGGGCCTTAT`		+	1360468	1360480	-280	-268
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG425	`GGCCTTAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTTGGGCCTTAT`		+	1360500	1360511	-248	-237
	AtREG505	`CTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG425	`GGCCTTAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTATTGGG`		+	1360565	1360572	-183	-176
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTAATGGG`		+	1360615	1360622	-133	-126
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak C 5 - 1360213 AT5G04710.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`C`	5	-	1360213	AT5G04710.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 1360228 AT5G04710.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	1360228	AT5G04710.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CATGGGCCAT - 1360306 1360315 AT5G04710.1

AtREG504 CATGGGCC   PPDB Motif GCCCA, CCATGG PLACE Motif GGGCC, TGGGCY

AtREG490 ATGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG437   TGGGCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TAGCCCATATA - 1360321 1360331 AT5G04710.1

AtREG581 TAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477 AGCCCATA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG432   GCCCATAT PPDB Motif GCCCA PLACE Motif

AtREG620    CCCATATA PPDB Motif GCCCA PLACE Motif

REG CATGGGCCCAAAGCCCATA - 1360344 1360362 AT5G04710.1

AtREG504 CATGGGCC            PPDB Motif GCCCA, CCATGG PLACE Motif GGGCC, TGGGCY

AtREG391 ATGGGCCC           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422   TGGGCCCA          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392    GGGCCCAA         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373     GGCCCAAA        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG559         CAAAGCCC    PPDB Motif GCCCA PLACE Motif

AtREG376          AAAGCCCA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378           AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477            AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

REG ACACGCGT - 1360442 1360449 AT5G04710.1

AtREG536 ACACGCGT ABA, Drought PPDB Motif PLACE Motif ACACNNG

REG AGACACGTC - 1360454 1360462 AT5G04710.1

AtREG470 AGACACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG481 GACACGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG ATAAGGCCCAATA - 1360468 1360480 AT5G04710.1

AtREG425 ATAAGGCC      PPDB Motif AACCG(G/A) PLACE Motif

AtREG351 TAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

REG ATAAGGCCCAAG - 1360500 1360511 AT5G04710.1

AtREG425 ATAAGGCC     PPDB Motif AACCG(G/A) PLACE Motif

AtREG351 TAAGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG505     GGCCCAAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY