PlantPromoterDB promoter information of AT5G04740.1

Summary of Gene (AT5G04740.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G04740 TAIR NCBI
Gene model	AT5G04740.1
Description	ACT domain-containing protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: uridylyltransferase-related (TAIR:AT1G16880.1); Has 345 Blast hits to 335 proteins in 47 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 1372391-1371192)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G04740.1 5'->3' (-) Promoter sequence AT5G04750.1 AT5G04750.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G04740.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 - 1371434 -43

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	-	1371434	-43

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 1371471 -80

TSS clone T clone - 1371465 -74

TSS clone T clone - 1371460 -69

TSS clone G clone - 1371434 -43

TSS clone G clone - 1371433 -42

TSS clone A clone - 1371432 -41

TSS clone G clone - 1371431 -40

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	1371471	-80
TSS clone	`T`	clone	-	1371465	-74
TSS clone	`T`	clone	-	1371460	-69
TSS clone	`G`	clone	-	1371434	-43
TSS clone	`G`	clone	-	1371433	-42
TSS clone	`A`	clone	-	1371432	-41
TSS clone	`G`	clone	-	1371431	-40

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTCTCT - 1371441 1371448 -50 -57

Y Patch TTTCTCTC - 1371470 1371477 -79 -86

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTCTCT`	-	1371441	1371448	-50	-57
Y Patch	`TTTCTCTC`	-	1371470	1371477	-79	-86
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGTCAGC - 1371690 1371697 -299 -306

AtREG515 ACGTCAGC SA PPDB Motif ACGT PLACE Motif ACGT

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGTCAGC`		-	1371690	1371697	-299	-306
	AtREG515	`ACGTCAGC`	SA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 23 + 1372175 AT5G04750.1, AT5G04750.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	23	+	1372175	AT5G04750.1, AT5G04750.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 1372155 AT5G04750.1, AT5G04750.2

TSS clone A clone + 1372156 AT5G04750.1, AT5G04750.2

TSS clone G clone + 1372175 AT5G04750.1, AT5G04750.2

TSS clone T clone + 1372185 AT5G04750.1, AT5G04750.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	1372155	AT5G04750.1, AT5G04750.2
TSS clone	`A`	clone	+	1372156	AT5G04750.1, AT5G04750.2
TSS clone	`G`	clone	+	1372175	AT5G04750.1, AT5G04750.2
TSS clone	`T`	clone	+	1372185	AT5G04750.1, AT5G04750.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CTTGGGCCAT + 1371949 1371958 AT5G04750.1, AT5G04750.2

AtREG505 CTTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG437   TGGGCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG CTATTGGGCTATT + 1372000 1372012 AT5G04750.1, AT5G04750.2

AtREG624 CTATTGGG      PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG584      GGGCTATT PPDB Motif GCCCA PLACE Motif

REG TAGCCCATTG + 1372014 1372023 AT5G04750.1, AT5G04750.2

AtREG581 TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372 AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG551   GCCCATTG PPDB Motif GCCCA PLACE Motif

REG ACCCGACCCGGT + 1372096 1372107 AT5G04750.1, AT5G04750.2

AtREG405 ACCCGACC     PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442 CCCGACCC    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG375   CCGACCCG   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG494    CGACCCGG PPDB Motif PLACE Motif

AtREG463     GACCCGGT PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

REG CGGACCCGAA + 1372109 1372118 AT5G04750.1, AT5G04750.2

AtREG491 CGGACCCG   PPDB Motif PLACE Motif

AtREG597   GACCCGAA PPDB Motif GGGACCC PLACE Motif