PlantPromoterDB promoter information of AT5G04750.1

Summary of Gene (AT5G04750.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G04750 TAIR NCBI
Gene model	AT5G04750.1
Description	F1F0-ATPase inhibitor protein, putative; FUNCTIONS IN: ATPase inhibitor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 33 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 1371202-1372401)

`Genome position from initiation codon` `AT5G04750.2 TSS from cDNA TSS information AT5G04750.1 5'->3' (+) Promoter sequence AT5G04740.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G04750.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 23 + 1372175 -27

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	23	+	1372175	-27

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 1372155 -47

TSS clone A clone + 1372156 -46

TSS clone G clone + 1372175 -27

TSS clone T clone + 1372185 -17

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	1372155	-47
TSS clone	`A`	clone	+	1372156	-46
TSS clone	`G`	clone	+	1372175	-27
TSS clone	`T`	clone	+	1372185	-17

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CTTGGGCCAT + 1371949 1371958 -253 -244

AtREG505 CTTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG437   TGGGCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG CTATTGGGCTATT + 1372000 1372012 -202 -190

AtREG624 CTATTGGG      PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG584      GGGCTATT PPDB Motif GCCCA PLACE Motif

REG TAGCCCATTG + 1372014 1372023 -188 -179

AtREG581 TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372 AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG551   GCCCATTG PPDB Motif GCCCA PLACE Motif

REG ACCCGACCCGGT + 1372096 1372107 -106 -95

AtREG405 ACCCGACC     PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442 CCCGACCC    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG375   CCGACCCG   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG494    CGACCCGG PPDB Motif PLACE Motif

AtREG463     GACCCGGT PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

REG CGGACCCGAA + 1372109 1372118 -93 -84

AtREG491 CGGACCCG   PPDB Motif PLACE Motif

AtREG597   GACCCGAA PPDB Motif GGGACCC PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CTTGGGCCAT`		+	1371949	1371958	-253	-244
	AtREG505	`CTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG437	`TGGGCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`CTATTGGGCTATT`		+	1372000	1372012	-202	-190
	AtREG624	`CTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG584	`GGGCTATT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TAGCCCATTG`		+	1372014	1372023	-188	-179
	AtREG581	`TAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG551	`GCCCATTG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACCCGACCCGGT`		+	1372096	1372107	-106	-95
	AtREG405	`ACCCGACC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`CCCGACCC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG375	`CCGACCCG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG494	`CGACCCGG`		PPDB Motif		PLACE Motif
	AtREG463	`GACCCGGT`		PPDB Motif	`AACCG(G/A), GGGACCC`	PLACE Motif
REG	`CGGACCCGAA`		+	1372109	1372118	-93	-84
	AtREG491	`CGGACCCG`		PPDB Motif		PLACE Motif
	AtREG597	`GACCCGAA`		PPDB Motif	`GGGACCC`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 - 1371434 AT5G04740.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	-	1371434	AT5G04740.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 1371471 AT5G04740.1

TSS clone T clone - 1371465 AT5G04740.1

TSS clone T clone - 1371460 AT5G04740.1

TSS clone G clone - 1371434 AT5G04740.1

TSS clone G clone - 1371433 AT5G04740.1

TSS clone A clone - 1371432 AT5G04740.1

TSS clone G clone - 1371431 AT5G04740.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	1371471	AT5G04740.1
TSS clone	`T`	clone	-	1371465	AT5G04740.1
TSS clone	`T`	clone	-	1371460	AT5G04740.1
TSS clone	`G`	clone	-	1371434	AT5G04740.1
TSS clone	`G`	clone	-	1371433	AT5G04740.1
TSS clone	`A`	clone	-	1371432	AT5G04740.1
TSS clone	`G`	clone	-	1371431	AT5G04740.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTCTCT - 1371441 1371448 AT5G04740.1

Y Patch TTTCTCTC - 1371470 1371477 AT5G04740.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTCTCT`	-	1371441	1371448	AT5G04740.1
Y Patch	`TTTCTCTC`	-	1371470	1371477	AT5G04740.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGTCAGC - 1371690 1371697 AT5G04740.1

AtREG515 ACGTCAGC SA PPDB Motif ACGT PLACE Motif ACGT