PlantPromoterDB promoter information of AT5G04920.1
Summary of Gene (AT5G04920.1)
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Overview
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Focused view (chromosome 5: 1442545-1441346)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G04920.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G04920.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | - | 1441926 | -381 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 1441993 | -448 |
| TSS clone | A | clone | - | 1441983 | -438 |
| TSS clone | G | clone | - | 1441967 | -422 |
| TSS clone | T | clone | - | 1441958 | -413 |
| TSS clone | T | clone | - | 1441945 | -400 |
| TSS clone | T | clone | - | 1441925 | -380 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCTTCTTCTTCTTC | - | 1441927 | 1441945 | -382 | -400 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACGACACGTC | - | 1441979 | 1441991 | -434 | -446 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | AACGACAC | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif | PLACE Motif | |||||
| AtREG478 | CGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG481 | GACACGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | TGTCGTTTT | - | 1442157 | 1442165 | -612 | -620 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | TGACACGTGTG | - | 1442169 | 1442179 | -624 | -634 | |||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||