PlantPromoterDB promoter information of AT5G05200.1

Summary of Gene (AT5G05200.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G05200 TAIR NCBI
Gene model	AT5G05200.1
Description	ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT4G31390.1); Has 7063 Blast hits to 7031 proteins in 1099 species: Archae - 67; Bacteria - 2625; Metazoa - 361; Fungi - 314; Plants - 339; Viruses - 14; Other Eukaryotes - 3343 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 1548082-1546883)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G05200.1 5'->3' (-) Promoter sequence AT5G05210.1 AT5G05210.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G05200.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 1547135 -53

TSS peak G 4 - 1547102 -20

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	1547135	-53
TSS peak	`G`	4	-	1547102	-20

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 1547140 -58

TSS clone G clone - 1547139 -57

TSS clone A clone - 1547138 -56

TSS clone G clone - 1547137 -55

TSS clone A clone - 1547135 -53

TSS clone G clone - 1547102 -20

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	1547140	-58
TSS clone	`G`	clone	-	1547139	-57
TSS clone	`A`	clone	-	1547138	-56
TSS clone	`G`	clone	-	1547137	-55
TSS clone	`A`	clone	-	1547135	-53
TSS clone	`G`	clone	-	1547102	-20

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTCCACGTGGCAT - 1547217 1547229 -135 -147

AtREG627 TTCCACGT      PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTG     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG367    CACGTGGC   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG379     ACGTGGCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG448      CGTGGCAT ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

REG TTAACCGGAAA - 1547299 1547309 -217 -227

AtREG501 TTAACCGG    PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG621 TAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG534   AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644    ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG CGGTTCGGTTTAATGGG - 1547322 1547338 -240 -256

AtREG456 CGGTTCGG          PPDB Motif AACCG(G/A) PLACE Motif

AtREG451 GGTTCGGT         PPDB Motif PLACE Motif

AtREG556   GTTCGGTT        PPDB Motif AACCG(G/A) PLACE Motif

AtREG568    TTCGGTTT       PPDB Motif AACCG(G/A) PLACE Motif

AtREG514     TCGGTTTA      PPDB Motif AACCG(G/A) PLACE Motif

AtREG473      CGGTTTAA     PPDB Motif AACCG(G/A) PLACE Motif

AtREG396          TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG

REG AACCGCGTTA - 1547368 1547377 -286 -295

AtREG441 AACCGCGT   Drought PPDB Motif PLACE Motif

AtREG488   CCGCGTTA SA PPDB Motif PLACE Motif

REG TAAGGGTATTT - 1547384 1547394 -302 -312

AtREG570 TAAGGGTA    PPDB Motif ACCCT PLACE Motif

AtREG623 AAGGGTAT   PPDB Motif ACCCT PLACE Motif

AtREG567   AGGGTATT PPDB Motif ACCCT PLACE Motif

AtREG602    GGGTATTT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTCCACGTGGCAT`		-	1547217	1547229	-135	-147
	AtREG627	`TTCCACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG408	`TCCACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG367	`CACGTGGC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC`
	AtREG379	`ACGTGGCA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG448	`CGTGGCAT`	ABA, DREB1Aox	PPDB Motif		PLACE Motif	`GCCAC`
REG	`TTAACCGGAAA`		-	1547299	1547309	-217	-227
	AtREG501	`TTAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG621	`TAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG644	`ACCGGAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGGTTCGGTTTAATGGG`		-	1547322	1547338	-240	-256
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`GGTTCGGT`		PPDB Motif		PLACE Motif
	AtREG556	`GTTCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`TTCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG473	`CGGTTTAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
REG	`AACCGCGTTA`		-	1547368	1547377	-286	-295
	AtREG441	`AACCGCGT`	Drought	PPDB Motif		PLACE Motif
	AtREG488	`CCGCGTTA`	SA	PPDB Motif		PLACE Motif
REG	`TAAGGGTATTT`		-	1547384	1547394	-302	-312
	AtREG570	`TAAGGGTA`		PPDB Motif	`ACCCT`	PLACE Motif
	AtREG623	`AAGGGTAT`		PPDB Motif	`ACCCT`	PLACE Motif
	AtREG567	`AGGGTATT`		PPDB Motif	`ACCCT`	PLACE Motif
	AtREG602	`GGGTATTT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2 + 1547440 AT5G05210.1, AT5G05210.2

TSS peak G 2 + 1547442 AT5G05210.1, AT5G05210.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2	+	1547440	AT5G05210.1, AT5G05210.2
TSS peak	`G`	2	+	1547442	AT5G05210.1, AT5G05210.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 1547442 AT5G05210.1, AT5G05210.2

TSS clone G clone + 1547443 AT5G05210.1, AT5G05210.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	1547442	AT5G05210.1, AT5G05210.2
TSS clone	`G`	clone	+	1547443	AT5G05210.1, AT5G05210.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTCTC + 1547458 1547465 AT5G05210.1, AT5G05210.2

Y Patch TTTCTTCTCTC + 1547473 1547483 AT5G05210.1, AT5G05210.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTCTC`	+	1547458	1547465	AT5G05210.1, AT5G05210.2
Y Patch	`TTTCTTCTCTC`	+	1547473	1547483	AT5G05210.1, AT5G05210.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAAAACGC + 1547141 1547148 AT5G05210.1, AT5G05210.2

AtREG585 CAAAACGC PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

REG ATGCCACGTGGAA + 1547217 1547229 AT5G05210.1, AT5G05210.2

AtREG448 ATGCCACG      ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

AtREG379 TGCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG367   GCCACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG408     CACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG627      ACGTGGAA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TTTCCGGTTAA + 1547299 1547309 AT5G05210.1, AT5G05210.2

AtREG644 TTTCCGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG534 TTCCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG621   TCCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG501    CCGGTTAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CCCATTAAACCGAACCG + 1547322 1547338 AT5G05210.1, AT5G05210.2

AtREG396 CCCATTAA          PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG473     TTAAACCG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG514      TAAACCGA     PPDB Motif AACCG(G/A) PLACE Motif

AtREG568       AAACCGAA    PPDB Motif AACCG(G/A) PLACE Motif

AtREG556        AACCGAAC   PPDB Motif AACCG(G/A) PLACE Motif

AtREG451         ACCGAACC PPDB Motif PLACE Motif

AtREG456          CCGAACCG PPDB Motif AACCG(G/A) PLACE Motif

REG TAACGCGGTT + 1547368 1547377 AT5G05210.1, AT5G05210.2

AtREG488 TAACGCGG   SA PPDB Motif PLACE Motif

AtREG441   ACGCGGTT Drought PPDB Motif PLACE Motif

REG AAATACCCTTA + 1547384 1547394 AT5G05210.1, AT5G05210.2

AtREG602 AAATACCC    PPDB Motif PLACE Motif

AtREG567 AATACCCT   PPDB Motif ACCCT PLACE Motif

AtREG623   ATACCCTT PPDB Motif ACCCT PLACE Motif

AtREG570    TACCCTTA PPDB Motif ACCCT PLACE Motif