PlantPromoterDB promoter information of AT5G05370.1

Summary of Gene (AT5G05370.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G05370 TAIR NCBI
Gene model	AT5G05370.1
Description	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative (TAIR:AT3G10860.1); Has 46 Blast hits to 46 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 1592869-1591670)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G05370.1 5'->3' (-) Promoter sequence AT5G05380.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G05370.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 33 - 1591903 -34

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	33	-	1591903	-34

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAACGGCAGCGTTTTG - 1591948 1591964 -79 -95

AtREG613 TAAACGGC          PPDB Motif AAACG(C/G) PLACE Motif

AtREG500 AAACGGCA         PPDB Motif AAACG(C/G) PLACE Motif

AtREG626        CAGCGTTT   PPDB Motif AAACG(C/G) PLACE Motif

AtREG585          GCGTTTTG PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

REG TAAAAGCC - 1591973 1591980 -104 -111

AtREG549 TAAAAGCC PPDB Motif PLACE Motif

REG CATTGGGCTTA - 1591994 1592004 -125 -135

AtREG461 CATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG402 ATTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426    TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

REG AAAAGGCCCATAT - 1592011 1592023 -142 -154

AtREG459 AAAAGGCC      PPDB Motif PLACE Motif

AtREG359 AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364     GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432      GCCCATAT PPDB Motif GCCCA PLACE Motif

REG GTCCACGTGGAT - 1592042 1592053 -173 -184

AtREG513 GTCCACGT     ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG547     ACGTGGAT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TTAAAGGCCCGT - 1592161 1592172 -292 -303

AtREG639 TTAAAGGC     PPDB Motif AAACG(C/G) PLACE Motif

AtREG467 TAAAGGCC    PPDB Motif PLACE Motif

AtREG359   AAAGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG429     AGGCCCGT PPDB Motif ACGGGC PLACE Motif GGGCC

REG GGCGCGTG - 1592175 1592182 -306 -313

AtREG486 GGCGCGTG PPDB Motif ACGCGC PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAACGGCAGCGTTTTG`		-	1591948	1591964	-79	-95
	AtREG613	`TAAACGGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG500	`AAACGGCA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG626	`CAGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG585	`GCGTTTTG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
REG	`TAAAAGCC`		-	1591973	1591980	-104	-111
	AtREG549	`TAAAAGCC`		PPDB Motif		PLACE Motif
REG	`CATTGGGCTTA`		-	1591994	1592004	-125	-135
	AtREG461	`CATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG426	`TGGGCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`AAAAGGCCCATAT`		-	1592011	1592023	-142	-154
	AtREG459	`AAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG432	`GCCCATAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GTCCACGTGGAT`		-	1592042	1592053	-173	-184
	AtREG513	`GTCCACGT`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG408	`TCCACGTGGA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG547	`ACGTGGAT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`TTAAAGGCCCGT`		-	1592161	1592172	-292	-303
	AtREG639	`TTAAAGGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG429	`AGGCCCGT`		PPDB Motif	`ACGGGC`	PLACE Motif	`GGGCC`
REG	`GGCGCGTG`		-	1592175	1592182	-306	-313
	AtREG486	`GGCGCGTG`		PPDB Motif	`ACGCGC`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 1592131 AT5G05380.1

TSS clone peak A clone + 1592150 AT5G05380.1

TSS clone A clone + 1592151 AT5G05380.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	1592131	AT5G05380.1
TSS clone peak	`A`	clone	+	1592150	AT5G05380.1
TSS clone	`A`	clone	+	1592151	AT5G05380.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTTCTTC + 1592181 1592188 AT5G05380.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTTCTTC`	+	1592181	1592188	AT5G05380.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAAAACGCTGCCGTTTA + 1591948 1591964 AT5G05380.1

AtREG585 CAAAACGC          PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG626   AAACGCTG        PPDB Motif AAACG(C/G) PLACE Motif

AtREG500         TGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG613          GCCGTTTA PPDB Motif AAACG(C/G) PLACE Motif

REG GGCTTTTA + 1591973 1591980 AT5G05380.1

AtREG549 GGCTTTTA PPDB Motif PLACE Motif

REG TAAGCCCAATG + 1591994 1592004 AT5G05380.1

AtREG426 TAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407 AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402   AGCCCAAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG461    GCCCAATG PPDB Motif GCCCA PLACE Motif

REG ATATGGGCCTTTT + 1592011 1592023 AT5G05380.1

AtREG432 ATATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359     GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG459      GGCCTTTT PPDB Motif PLACE Motif

REG ATCCACGTGGAC + 1592042 1592053 AT5G05380.1

AtREG547 ATCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG513     ACGTGGAC ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG