Summary of Gene (AT5G05600)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G05600 5'->3' (+) Promoter sequence AT5G05590.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 1672194 | -72 |
TSS clone peak | T | clone | + | 1672196 | -70 |
TSS clone | A | clone | + | 1672249 | -17 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTTTATATA | + | 1672210 | 1672219 | -56 | -47 |
Y Patch | CCTCTTCTT | + | 1672205 | 1672213 | -61 | -53 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCACACGT | + | 1672075 | 1672082 | -191 | -184 | |||
AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 1668331 | AT5G05590.2, AT5G05590.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTC | - | 1668313 | 1668320 | AT5G05590.1, AT5G05590.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTCGGTTTGGTTCGGTTTAA | - | 1668378 | 1668397 | AT5G05590.1, AT5G05590.2 | ||||
AtREG568 | TTCGGTTT TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG655 | TGGTTCGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTCGGTTT | - | 1668426 | 1668433 | AT5G05590.1, AT5G05590.2 | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AAACCGAA | - | 1668448 | 1668455 | AT5G05590.1, AT5G05590.2 | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |