Summary of Gene (AT5G05740.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G05740.2 5'->3' (-) Promoter sequence AT5G05750.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | - | 1727014 | -155 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 1727013 | -154 |
TSS clone | C | clone | - | 1727004 | -145 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTCTCTCCTCC | - | 1727021 | 1727033 | -162 | -174 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACGACGA | - | 1727078 | 1727087 | -219 | -228 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG648 | AACGACGA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACGTGTCGTTT | - | 1727128 | 1727138 | -269 | -279 | |||
AtREG478 | ACGTGTCG | ABA, DREB1Aox, Drought | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG428 | CGTGTCGT | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTAAGGCCCAAAT | - | 1727157 | 1727169 | -298 | -310 | |||
AtREG416 | TTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG351 | TAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCAGGCCC | - | 1727239 | 1727246 | -380 | -387 | |||
AtREG374 | TCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | GGGCTTTG | - | 1727258 | 1727265 | -399 | -406 | |||
AtREG559 | GGGCTTTG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | T | 10 | + | 1727435 | AT5G05750.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 1727429 | AT5G05750.1 |
TSS clone | A | clone | + | 1727432 | AT5G05750.1 |
TSS clone | T | clone | + | 1727437 | AT5G05750.1 |
TSS clone | G | clone | + | 1727449 | AT5G05750.1 |
TSS clone | G | clone | + | 1727458 | AT5G05750.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATTTGGGCCTTAA | + | 1727157 | 1727169 | AT5G05750.1 | ||||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG416 | GGCCTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGCCTGA | + | 1727239 | 1727246 | AT5G05750.1 | ||||
AtREG374 | GGGCCTGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | CAAAGCCC | + | 1727258 | 1727265 | AT5G05750.1 | ||||
AtREG559 | CAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAACGGCA | + | 1727313 | 1727321 | AT5G05750.1 | ||||
AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TAAACGACAC | + | 1727338 | 1727347 | AT5G05750.1 | ||||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | AACGACAC | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
REG | CAAAACGCCACG | + | 1727368 | 1727379 | AT5G05750.1 | ||||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG508 | ACGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  |