PlantPromoterDB promoter information of AT5G05740.2

Summary of Gene (AT5G05740.2)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G05740 TAIR NCBI
Gene model	AT5G05740.2
Description	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.

#

Overview

Focused view (chromosome 5: 1727859-1726660)

`Genome position from initiation codon` `AT5G05740.1 TSS from cDNA TSS information AT5G05740.2 5'->3' (-) Promoter sequence AT5G05750.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G05740.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 17 - 1727014 -155

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	17	-	1727014	-155

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 1727013 -154

TSS clone C clone - 1727004 -145

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	1727013	-154
TSS clone	`C`	clone	-	1727004	-145

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCCTCTCTCCTCC - 1727021 1727033 -162 -174

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCCTCTCTCCTCC`	-	1727021	1727033	-162	-174
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAACGACGA - 1727078 1727087 -219 -228

AtREG520 AAAACGAC   PPDB Motif PLACE Motif

AtREG415 AAACGACG PPDB Motif PLACE Motif

AtREG648   AACGACGA PPDB Motif PLACE Motif

REG ACGTGTCGTTT - 1727128 1727138 -269 -279

AtREG478 ACGTGTCG    ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG428 CGTGTCGT   ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

AtREG527   GTGTCGTT DREB1Aox PPDB Motif PLACE Motif

AtREG569    TGTCGTTT PPDB Motif PLACE Motif

REG TTAAGGCCCAAAT - 1727157 1727169 -298 -310

AtREG416 TTAAGGCC      PPDB Motif PLACE Motif

AtREG351 TAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373     GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG421      GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG TCAGGCCC - 1727239 1727246 -380 -387

AtREG374 TCAGGCCC PPDB Motif GCCCA PLACE Motif GGGCC

REG GGGCTTTG - 1727258 1727265 -399 -406

AtREG559 GGGCTTTG PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAACGACGA`		-	1727078	1727087	-219	-228
	AtREG520	`AAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG648	`AACGACGA`		PPDB Motif		PLACE Motif
REG	`ACGTGTCGTTT`		-	1727128	1727138	-269	-279
	AtREG478	`ACGTGTCG`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG428	`CGTGTCGT`	ABA, DREB1Aox, Ethylene, Drought	PPDB Motif		PLACE Motif
	AtREG527	`GTGTCGTT`	DREB1Aox	PPDB Motif		PLACE Motif
	AtREG569	`TGTCGTTT`		PPDB Motif		PLACE Motif
REG	`TTAAGGCCCAAAT`		-	1727157	1727169	-298	-310
	AtREG416	`TTAAGGCC`		PPDB Motif		PLACE Motif
	AtREG351	`TAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TCAGGCCC`		-	1727239	1727246	-380	-387
	AtREG374	`TCAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`GGGCTTTG`		-	1727258	1727265	-399	-406
	AtREG559	`GGGCTTTG`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak T 10 + 1727435 AT5G05750.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`T`	10	+	1727435	AT5G05750.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 1727429 AT5G05750.1

TSS clone A clone + 1727432 AT5G05750.1

TSS clone T clone + 1727437 AT5G05750.1

TSS clone G clone + 1727449 AT5G05750.1

TSS clone G clone + 1727458 AT5G05750.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	1727429	AT5G05750.1
TSS clone	`A`	clone	+	1727432	AT5G05750.1
TSS clone	`T`	clone	+	1727437	AT5G05750.1
TSS clone	`G`	clone	+	1727449	AT5G05750.1
TSS clone	`G`	clone	+	1727458	AT5G05750.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATTTGGGCCTTAA + 1727157 1727169 AT5G05750.1

AtREG421 ATTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351     GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG416      GGCCTTAA PPDB Motif PLACE Motif

REG GGGCCTGA + 1727239 1727246 AT5G05750.1

AtREG374 GGGCCTGA PPDB Motif GCCCA PLACE Motif GGGCC

REG CAAAGCCC + 1727258 1727265 AT5G05750.1

AtREG559 CAAAGCCC PPDB Motif GCCCA PLACE Motif

REG AAAACGGCA + 1727313 1727321 AT5G05750.1

AtREG531 AAAACGGC PPDB Motif AAACG(C/G) PLACE Motif

AtREG500 AAACGGCA PPDB Motif AAACG(C/G) PLACE Motif

REG TAAACGACAC + 1727338 1727347 AT5G05750.1

AtREG565 TAAACGAC   PPDB Motif PLACE Motif

AtREG569 AAACGACA PPDB Motif PLACE Motif

AtREG527   AACGACAC DREB1Aox PPDB Motif PLACE Motif

REG CAAAACGCCACG + 1727368 1727379 AT5G05750.1

AtREG585 CAAAACGC     PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG650 AAAACGCC    PPDB Motif AAACG(C/G) PLACE Motif

AtREG508     ACGCCACG PPDB Motif PLACE Motif GCCAC