PlantPromoterDB promoter information of AT5G06320
Summary of Gene (AT5G06320)
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Overview
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Focused view (chromosome 5: 1932711-1931512)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G06320 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G06320
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 30 | - | 1931792 | -81 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 1931797 | -86 |
| TSS clone | A | clone | - | 1931796 | -85 |
| TSS clone | A | clone | - | 1931795 | -84 |
| TSS clone | T | clone | - | 1931791 | -80 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTGTATATATATT | - | 1931820 | 1931832 | -109 | -121 |
| Y Patch | CCTCTTCTTCTTC | - | 1931803 | 1931815 | -92 | -104 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACCGCGT | - | 1931872 | 1931879 | -161 | -168 | |||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
| REG | TTGACTTT | - | 1931890 | 1931897 | -179 | -186 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | TTAAACCGA | - | 1931908 | 1931916 | -197 | -205 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||