PlantPromoterDB promoter information of AT5G07190
Summary of Gene (AT5G07190)
|
Overview
|
Focused view (chromosome 5: 2236610-2237809)
|
Genome position
from initiation codon AT5G07190.2 TSS from cDNA TSS information AT5G07190 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G07190
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 2237493 | -117 |
| TSS clone peak | A | clone | + | 2237562 | -48 |
| TSS clone | T | clone | + | 2237563 | -47 |
| TSS clone | T | clone | + | 2237565 | -45 |
| TSS clone | C | clone | + | 2237567 | -43 |
| TSS clone | C | clone | + | 2237589 | -21 |
| TSS clone | A | clone | + | 2237590 | -20 |
| TSS clone | C | clone | + | 2237591 | -19 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATAAC | + | 2237530 | 2237539 | -80 | -71 |
| Y Patch | CCTCTTTCT | + | 2237551 | 2237559 | -59 | -51 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAGGGGT | + | 2237297 | 2237304 | -313 | -306 | |||
| AtREG636 | TAAGGGGT | PPDB Motif | ACCCCT | PLACE Motif | |||||
| REG | GATGACGTGTCA | + | 2237339 | 2237350 | -271 | -260 | |||
| AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG517 | TGACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG481 | GACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||