PlantPromoterDB promoter information of AT5G07440
Summary of Gene (AT5G07440)
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Overview
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Focused view (chromosome 5: 2355153-2356352)
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Genome position
from initiation codon AT5G07440.2 AT5G07440.3 TSS from cDNA TSS information AT5G07440 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G07440
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 2355936 | -217 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 2355940 | -213 |
| TSS clone | C | clone | + | 2355941 | -212 |
| TSS clone | T | clone | + | 2355962 | -191 |
| TSS clone | C | clone | + | 2355963 | -190 |
| TSS clone | A | clone | + | 2355964 | -189 |
| TSS clone | T | clone | + | 2355965 | -188 |
| TSS clone | A | clone | + | 2355967 | -186 |
| TSS clone | C | clone | + | 2355968 | -185 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTCTTCTT | + | 2355916 | 2355927 | -237 | -226 |
| Y Patch | CTTTCTTCTTC | + | 2355948 | 2355958 | -205 | -195 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAGGGGTAA | + | 2355829 | 2355838 | -324 | -315 | |||
| AtREG636 | TAAGGGGT | PPDB Motif | ACCCCT | PLACE Motif | |||||
| AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||