PlantPromoterDB promoter information of AT5G07460
Summary of Gene (AT5G07460)
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Overview
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Focused view (chromosome 5: 2362885-2361686)
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Genome position
from initiation codon AT5G07470.1 TSS from cDNA TSS information AT5G07460 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G07460
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 2362032 | -147 |
| TSS peak | A | 23 | - | 2361905 | -20 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 2361959 | -74 |
| TSS clone | T | clone | - | 2361904 | -19 |
| TSS clone | A | clone | - | 2361893 | -8 |
| TSS clone | C | clone | - | 2361892 | -7 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATATATATAAAC | - | 2361926 | 2361942 | -41 | -57 |
| TATA Box | TTATAAATG | - | 2362055 | 2362063 | -170 | -178 |
| Y Patch | TTCTTCTCT | - | 2361872 | 2361880 | 13 | 5 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATGACG | - | 2362101 | 2362108 | -216 | -223 | |||
| AtREG657 | AAATGACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||