PlantPromoterDB promoter information of AT5G07580
Summary of Gene (AT5G07580)
|
Overview
|
Focused view (chromosome 5: 2389175-2390374)
|
Genome position
from initiation codon TSS from cDNA TSS information AT5G07580 5'->3' (+) Promoter sequence AT5G07550.1
AT5G07550.2 AT5G07550.3 AT5G07560.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G07580
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 2399504 | -21 |
| TSS clone peak | T | clone | + | 2399507 | -18 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAATGGG | + | 2399243 | 2399250 | -282 | -275 | |||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | - | 2389236 | AT5G07550.1, AT5G07550.2, AT5G07550.3 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTTCC | - | 2389250 | 2389257 | AT5G07550.1, AT5G07550.2, AT5G07550.3 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATGACGTGACGT | - | 2389356 | 2389367 | AT5G07550.1, AT5G07550.2, AT5G07550.3 | ||||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG489 | CGTGACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | AAAAGGCC | - | 2389406 | 2389413 | AT5G07550.1, AT5G07550.2, AT5G07550.3 | ||||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||