PlantPromoterDB promoter information of AT5G08160.2
Summary of Gene (AT5G08160.2)
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Overview
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Focused view (chromosome 5: 2628942-2627743)
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Genome position
from initiation codon AT5G08170.1 TSS from cDNA TSS information AT5G08160.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G08160.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 2628110 | -168 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 2628114 | -172 |
| TSS clone | A | clone | - | 2628109 | -167 |
| TSS clone | T | clone | - | 2628097 | -155 |
| TSS clone | G | clone | - | 2628055 | -113 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGACACG | - | 2628160 | 2628167 | -218 | -225 | |||
| AtREG498 | GTGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | TAAAACGC | - | 2628196 | 2628203 | -254 | -261 | |||
| AtREG564 | TAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CCGAACCA | - | 2628210 | 2628217 | -268 | -275 | |||
| AtREG655 | CCGAACCA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||