PlantPromoterDB promoter information of AT5G08330

Summary of Gene (AT5G08330)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G08330 TAIR NCBI
Gene model	AT5G08330
Description	TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT5G23280.1); Has 741 Blast hits to 732 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 30; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 2679828-2681027)

`Genome position from initiation codon` `AT5G08330.1 TSS from cDNA TSS information AT5G08330 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G08330

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 + 2680801 -27

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	+	2680801	-27

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 2680744 -84

TSS clone A clone + 2680747 -81

TSS clone T clone + 2680753 -75

TSS clone T clone + 2680779 -49

TSS clone G clone + 2680796 -32

TSS clone G clone + 2680806 -22

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	2680744	-84
TSS clone	`A`	clone	+	2680747	-81
TSS clone	`T`	clone	+	2680753	-75
TSS clone	`T`	clone	+	2680779	-49
TSS clone	`G`	clone	+	2680796	-32
TSS clone	`G`	clone	+	2680806	-22

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCCTTCTTCTTCTTCTTCTTCTTCTTCTCCTC + 2680756 2680789 -72 -39

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCCTTCTTCTTCTTCTTCTTCTTCTTCTCCTC`	+	2680756	2680789	-72	-39
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAATGGG + 2680541 2680548 -287 -280

AtREG443 TAAATGGG PPDB Motif GCCCA PLACE Motif

REG AAGCGCGTGA + 2680629 2680638 -199 -190

AtREG492 AAGCGCGT PPDB Motif ACGCGC PLACE Motif

AtREG381 AGCGCGTG PPDB Motif ACGCGC PLACE Motif

AtREG395 GCGCGTGA PPDB Motif ACGCGC PLACE Motif

REG AACCGCGT + 2680644 2680651 -184 -177

AtREG441 AACCGCGT Drought PPDB Motif PLACE Motif

REG GTGGGACCC + 2680689 2680697 -139 -131

AtREG406 GTGGGACC PPDB Motif GGGACCC PLACE Motif

AtREG596 TGGGACCC PPDB Motif GGGACCC PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAATGGG`		+	2680541	2680548	-287	-280
	AtREG443	`TAAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`AAGCGCGTGA`		+	2680629	2680638	-199	-190
	AtREG492	`AAGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
	AtREG381	`AGCGCGTG`		PPDB Motif	`ACGCGC`	PLACE Motif
	AtREG395	`GCGCGTGA`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`AACCGCGT`		+	2680644	2680651	-184	-177
	AtREG441	`AACCGCGT`	Drought	PPDB Motif		PLACE Motif
REG	`GTGGGACCC`		+	2680689	2680697	-139	-131
	AtREG406	`GTGGGACC`		PPDB Motif	`GGGACCC`	PLACE Motif
	AtREG596	`TGGGACCC`		PPDB Motif	`GGGACCC`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None