PlantPromoterDB promoter information of AT5G08535.1

Summary of Gene (AT5G08535.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G08535 TAIR NCBI
Gene model	AT5G08535.1
Description	D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT3G52350.1); Has 689 Blast hits to 689 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 494; Fungi - 66; Plants - 91; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 2761455-2762654)

`Genome position from initiation codon` `AT5G08535.2 TSS from cDNA TSS information AT5G08535.1 5'->3' (+) Promoter sequence AT5G08530.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G08535.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 + 2762107 -348

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	+	2762107	-348

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 2762086 -369

TSS clone C clone + 2762087 -368

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	2762086	-369
TSS clone	`C`	clone	+	2762087	-368

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTATGGGCCTCT + 2761926 2761937 -529 -518

AtREG394 TTATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG447    TGGGCCTC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG411     GGGCCTCT PPDB Motif GCCCA PLACE Motif GGGCC

REG CCAGGCCCAAAT + 2761944 2761955 -511 -500

AtREG619 CCAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG370 CAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373    GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG421     GCCCAAAT PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTATGGGCCTCT`		+	2761926	2761937	-529	-518
	AtREG394	`TTATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG447	`TGGGCCTC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG411	`GGGCCTCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`CCAGGCCCAAAT`		+	2761944	2761955	-511	-500
	AtREG619	`CCAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG370	`CAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 21 - 2761842 AT5G08530.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	21	-	2761842	AT5G08530.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 2761874 AT5G08530.1

TSS clone T clone - 2761869 AT5G08530.1

TSS clone C clone - 2761860 AT5G08530.1

TSS clone T clone - 2761858 AT5G08530.1

TSS clone G clone - 2761855 AT5G08530.1

TSS clone G clone - 2761841 AT5G08530.1

TSS clone A clone - 2761838 AT5G08530.1

TSS clone T clone - 2761837 AT5G08530.1

TSS clone A clone - 2761835 AT5G08530.1

TSS clone T clone - 2761834 AT5G08530.1

TSS clone T clone - 2761802 AT5G08530.1

TSS clone T clone - 2761796 AT5G08530.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	2761874	AT5G08530.1
TSS clone	`T`	clone	-	2761869	AT5G08530.1
TSS clone	`C`	clone	-	2761860	AT5G08530.1
TSS clone	`T`	clone	-	2761858	AT5G08530.1
TSS clone	`G`	clone	-	2761855	AT5G08530.1
TSS clone	`G`	clone	-	2761841	AT5G08530.1
TSS clone	`A`	clone	-	2761838	AT5G08530.1
TSS clone	`T`	clone	-	2761837	AT5G08530.1
TSS clone	`A`	clone	-	2761835	AT5G08530.1
TSS clone	`T`	clone	-	2761834	AT5G08530.1
TSS clone	`T`	clone	-	2761802	AT5G08530.1
TSS clone	`T`	clone	-	2761796	AT5G08530.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AGAGGCCCATAA - 2761926 2761937 AT5G08530.1

AtREG411 AGAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG447 GAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364    GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG394     GCCCATAA PPDB Motif GCCCA PLACE Motif

REG ATTTGGGCCTGG - 2761944 2761955 AT5G08530.1

AtREG421 ATTTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG370    TGGGCCTG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG619     GGGCCTGG PPDB Motif GCCCA PLACE Motif GGGCC