PlantPromoterDB promoter information of AT5G08680.1

Summary of Gene (AT5G08680.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G08680 TAIR NCBI
Gene model	AT5G08680.1
Description	Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.

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Overview

Focused view (chromosome 5: 2820992-2822191)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G08680.1 5'->3' (+) Promoter sequence AT5G08670.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G08680.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 + 2821922 -70

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	+	2821922	-70

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 2821926 -66

TSS clone A clone + 2821928 -64

TSS clone T clone + 2821929 -63

TSS clone A clone + 2821932 -60

TSS clone A clone + 2821948 -44

TSS clone G clone + 2821949 -43

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	2821926	-66
TSS clone	`A`	clone	+	2821928	-64
TSS clone	`T`	clone	+	2821929	-63
TSS clone	`A`	clone	+	2821932	-60
TSS clone	`A`	clone	+	2821948	-44
TSS clone	`G`	clone	+	2821949	-43

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TATATAGAG + 2821895 2821903 -97 -89

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TATATAGAG`	+	2821895	2821903	-97	-89
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGTTTTGA + 2821764 2821771 -228 -221

AtREG653 CGTTTTGA PPDB Motif AAACG(C/G) PLACE Motif

REG TCACACGTGTCG + 2821823 2821834 -169 -158

AtREG588 TCACACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG460 CACACGTG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366    CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG478     ACGTGTCG ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGTTTTGA`		+	2821764	2821771	-228	-221
	AtREG653	`CGTTTTGA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TCACACGTGTCG`		+	2821823	2821834	-169	-158
	AtREG588	`TCACACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG460	`CACACGTG`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG366	`CACGTGTC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG478	`ACGTGTCG`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 204 - 2821165 AT5G08670.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	204	-	2821165	AT5G08670.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 2821208 AT5G08670.1

TSS clone T clone - 2821204 AT5G08670.1

TSS clone C clone - 2821195 AT5G08670.1

TSS clone T clone - 2821187 AT5G08670.1

TSS clone T clone - 2821177 AT5G08670.1

TSS clone T clone - 2821175 AT5G08670.1

TSS clone C clone - 2821174 AT5G08670.1

TSS clone C clone - 2821172 AT5G08670.1

TSS clone T clone - 2821169 AT5G08670.1

TSS clone T clone - 2821167 AT5G08670.1

TSS clone A clone - 2821165 AT5G08670.1

TSS clone A clone - 2821164 AT5G08670.1

TSS clone C clone - 2821156 AT5G08670.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	2821208	AT5G08670.1
TSS clone	`T`	clone	-	2821204	AT5G08670.1
TSS clone	`C`	clone	-	2821195	AT5G08670.1
TSS clone	`T`	clone	-	2821187	AT5G08670.1
TSS clone	`T`	clone	-	2821177	AT5G08670.1
TSS clone	`T`	clone	-	2821175	AT5G08670.1
TSS clone	`C`	clone	-	2821174	AT5G08670.1
TSS clone	`C`	clone	-	2821172	AT5G08670.1
TSS clone	`T`	clone	-	2821169	AT5G08670.1
TSS clone	`T`	clone	-	2821167	AT5G08670.1
TSS clone	`A`	clone	-	2821165	AT5G08670.1
TSS clone	`A`	clone	-	2821164	AT5G08670.1
TSS clone	`C`	clone	-	2821156	AT5G08670.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTCTCC - 2821116 2821125 AT5G08670.1

Y Patch CTTTCTCTCTCTCTCTC - 2821166 2821182 AT5G08670.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTCTCC`	-	2821116	2821125	AT5G08670.1
Y Patch	`CTTTCTCTCTCTCTCTC`	-	2821166	2821182	AT5G08670.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GGGCCTTT - 2821221 2821228 AT5G08670.1

AtREG359 GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

REG ATAGGCCCAACTAAGCCCATTAACTAAGCCCAC - 2821254 2821286 AT5G08670.1

AtREG362 ATAGGCCC                          PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358 TAGGCCCA                         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA                        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG449    GGCCCAAC                       PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

AtREG607     GCCCAACT                      PPDB Motif GCCCA PLACE Motif

AtREG634           CTAAGCCC     CTAAGCCC   PPDB Motif GCCCA PLACE Motif

AtREG426            TAAGCCCA     TAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378             AAGCCCAT              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372              AGCCCATT             PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357               GCCCATTA            PPDB Motif GCCCA PLACE Motif

AtREG396                CCCATTAA           PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG518                          AAGCCCAC PPDB Motif GCCCA PLACE Motif TGGGCY