PlantPromoterDB promoter information of AT5G08790.1
Summary of Gene (AT5G08790.1)
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Overview
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Focused view (chromosome 5: 2861144-2859945)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G08790.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G08790.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 36 | - | 2860259 | -115 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 2860261 | -117 |
| TSS clone | G | clone | - | 2860259 | -115 |
| TSS clone | A | clone | - | 2860258 | -114 |
| TSS clone | T | clone | - | 2860257 | -113 |
| TSS clone | T | clone | - | 2860251 | -107 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTATAAAAC | - | 2860286 | 2860296 | -142 | -152 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTGTCAT | - | 2860359 | 2860366 | -215 | -222 | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
| REG | CGCACGTG | - | 2860381 | 2860388 | -237 | -244 | |||
| AtREG541 | CGCACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| REG | ACGCCACGTA | - | 2860439 | 2860448 | -295 | -304 | |||
| AtREG508 | ACGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| REG | AGTCGGTC | - | 2860516 | 2860523 | -372 | -379 | |||
| AtREG638 | AGTCGGTC | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||