PlantPromoterDB promoter information of AT5G09230.1
Summary of Gene (AT5G09230.1)
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Overview
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Focused view (chromosome 5: 2870655-2871854)
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Genome position
from initiation codon AT5G09230.3 AT5G09230.4 AT5G09230.5 AT5G09230.6 AT5G09230.7 TSS from cDNA TSS information AT5G09230.1 5'->3' (+) Promoter sequence AT5G09225.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G09230.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 2871378 | -277 |
| TSS clone peak | A | clone | + | 2871406 | -249 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACGACGTCGTTT | + | 2871237 | 2871249 | -418 | -406 | |||
| AtREG493 | AACGACGTCGTT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG431 | ACGACGTCGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| REG | CTACGTGGCT | + | 2871284 | 2871293 | -371 | -362 | |||
| AtREG495 | CTACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG413 | TACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG450 | ACGTGGCT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | - | 2871198 | AT5G09225.1 |
| TSS clone | T | clone | - | 2871197 | AT5G09225.1 |
| TSS clone peak | T | clone | - | 2871193 | AT5G09225.1 |
| TSS clone | G | clone | - | 2871190 | AT5G09225.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||