PlantPromoterDB promoter information of AT5G09650
Summary of Gene (AT5G09650)
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Overview
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Focused view (chromosome 5: 2994117-2992918)
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Genome position
from initiation codon AT5G09655.1 AT5G09660.1 AT5G09660.2 AT5G09660.3 AT5G09660.4 TSS from cDNA TSS information AT5G09650 5'->3' (-) Promoter sequence AT5G09655
AT5G09655.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G09650
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 2993192 | -75 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 2993207 | -90 |
| TSS clone | T | clone | - | 2993205 | -88 |
| TSS clone | C | clone | - | 2993203 | -86 |
| TSS clone | T | clone | - | 2993202 | -85 |
| TSS clone | T | clone | - | 2993200 | -83 |
| TSS clone | T | clone | - | 2993198 | -81 |
| TSS clone | T | clone | - | 2993193 | -76 |
| TSS clone | G | clone | - | 2993192 | -75 |
| TSS clone | G | clone | - | 2993188 | -71 |
| TSS clone | G | clone | - | 2993186 | -69 |
| TSS clone | T | clone | - | 2993185 | -68 |
| TSS clone | A | clone | - | 2993147 | -30 |
| TSS clone | C | clone | - | 2993143 | -26 |
| TSS clone | C | clone | - | 2993140 | -23 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCACGTG | - | 2993245 | 2993252 | -128 | -135 | |||
| AtREG464 | CCCACGTG | ABA, Auxin, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| REG | CTGACGTG | - | 2993350 | 2993357 | -233 | -240 | |||
| AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | CGAACCGGA | - | 2993376 | 2993384 | -259 | -267 | |||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||