PlantPromoterDB promoter information of AT5G09810
Summary of Gene (AT5G09810)
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Overview
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Focused view (chromosome 5: 3051809-3053008)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G09810 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G09810
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 209 | + | 3052167 | -642 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 3052165 | -644 |
| TSS clone | T | clone | + | 3052166 | -643 |
| TSS clone | A | clone | + | 3052167 | -642 |
| TSS clone | G | clone | + | 3052168 | -641 |
| TSS clone | T | clone | + | 3052169 | -640 |
| TSS clone | G | clone | + | 3052170 | -639 |
| TSS clone | T | clone | + | 3052171 | -638 |
| TSS clone | T | clone | + | 3052176 | -633 |
| TSS clone | G | clone | + | 3052177 | -632 |
| TSS clone | T | clone | + | 3052201 | -608 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GCTATATATTC | + | 3052130 | 3052140 | -679 | -669 |
| Y Patch | TTCTCCTCC | + | 3052191 | 3052199 | -618 | -610 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGAACCG | + | 3051947 | 3051954 | -862 | -855 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ACGGTTTAG | + | 3051966 | 3051974 | -843 | -835 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||