Summary of Gene (AT5G10280)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G10280 5'->3' (+) Promoter sequence AT5G10240.1
AT5G10240.2 AT5G10250.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | C | 4 | + | 3232670 | -106 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 3232654 | -122 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTGGA | + | 3232389 | 3232396 | -387 | -380 | |||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | CACGTGGT | + | 3232578 | 3232585 | -198 | -191 | |||
AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 3216466 | AT5G10240.1, AT5G10240.2 |
TSS clone | C | clone | - | 3216464 | AT5G10240.1, AT5G10240.2 |
TSS clone peak | T | clone | - | 3216448 | AT5G10240.1, AT5G10240.2 |
TSS clone | T | clone | - | 3216445 | AT5G10240.1, AT5G10240.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CAACGGTC | - | 3216523 | 3216530 | AT5G10240.1, AT5G10240.2 | ||||
AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | |||
REG | TCAAAACGCGTCGTTTT | - | 3216684 | 3216700 | AT5G10240.1, AT5G10240.2 | ||||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG439 | GCGTCGTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGACATCG | - | 3216722 | 3216729 | AT5G10240.1, AT5G10240.2 | ||||
AtREG630 | CGACATCG | PPDB Motif |   | PLACE Motif |   |