Summary of Gene (AT5G10280)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G10280 5'->3' (+) Promoter sequence AT5G10290.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | C | 4 | + | 3232670 | -106 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 3232654 | -122 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTGGA | + | 3232389 | 3232396 | -387 | -380 | |||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | CACGTGGT | + | 3232578 | 3232585 | -198 | -191 | |||
AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 3239617 | AT5G10300.1 |
TSS peak | A | 4 | - | 3238650 | AT5G10290.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 3239623 | AT5G10300.1 |
TSS clone | T | clone | + | 3239624 | AT5G10300.1 |
TSS clone | C | clone | - | 3238649 | AT5G10290.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CACTATATAAT | + | 3239584 | 3239594 | AT5G10300.1 | |
Y Patch | CTTTCTCT | - | 3238642 | 3238649 | AT5G10290.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CAAAGGCC | - | 3238730 | 3238737 | AT5G10290.1 | ||||
AtREG656 | CAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCCACGTAATTA | - | 3238850 | 3238862 | AT5G10290.1 | ||||
AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG646 | CGTAATTA | ABA | PPDB Motif |   | PLACE Motif |   |