PlantPromoterDB promoter information of AT5G10280
Summary of Gene (AT5G10280)
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Overview
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Focused view (chromosome 5: 3249826-3251025)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G10280 5'->3' (+) Promoter sequence AT5G10330.1
AT5G10330.2 AT5G10330.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G10280
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 4 | + | 3232670 | -106 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 3232654 | -122 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTTGGA | + | 3232389 | 3232396 | -387 | -380 | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | CACGTGGT | + | 3232578 | 3232585 | -198 | -191 | |||
| AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | - | 3250078 | AT5G10330.1, AT5G10330.2, AT5G10330.3 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 3250335 | AT5G10330.1, AT5G10330.2, AT5G10330.3 |
| TSS clone | A | clone | - | 3250078 | AT5G10330.1, AT5G10330.2, AT5G10330.3 |
| TSS clone | C | clone | - | 3250034 | AT5G10330.1, AT5G10330.2, AT5G10330.3 |
| TSS clone | T | clone | - | 3249911 | AT5G10330.1, AT5G10330.2, AT5G10330.3 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AACCGGGTT | - | 3250169 | 3250177 | AT5G10330.1, AT5G10330.2, AT5G10330.3 | ||||
| AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG516 | ACCGGGTT | PPDB Motif | PLACE Motif | ||||||
| REG | TCGACCCGA | - | 3250186 | 3250194 | AT5G10330.1, AT5G10330.2, AT5G10330.3 | ||||
| AtREG539 | TCGACCCG | PPDB Motif | PLACE Motif | ||||||
| AtREG383 | CGACCCGA | PPDB Motif | PLACE Motif | ||||||