PlantPromoterDB promoter information of AT5G10380.1
Summary of Gene (AT5G10380.1)
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Overview
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Focused view (chromosome 5: 3269619-3270818)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G10380.1 5'->3' (+) Promoter sequence AT5G10400.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G10380.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 28 | + | 3267706 | -113 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 3266846 | -973 |
| TSS clone | T | clone | + | 3267636 | -183 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCTTTAA | + | 3267480 | 3267487 | -339 | -332 | |||
| AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATCCAACGG | - | 3269660 | 3269668 | AT5G10390.1 | ||||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | ATGACACG | - | 3269759 | 3269766 | AT5G10390.1 | ||||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | CTACGTGGAC | - | 3269799 | 3269808 | AT5G10390.1 | ||||
| AtREG495 | CTACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||