Summary of Gene (AT5G10380.1)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G10380.1 5'->3' (+) Promoter sequence AT5G10400.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 28 | + | 3267706 | -113 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 3266846 | -973 |
TSS clone | T | clone | + | 3267636 | -183 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCTTTAA | + | 3267480 | 3267487 | -339 | -332 | |||
AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 3270952 | AT5G10400.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | - | 3270954 | AT5G10400.1 |
TSS clone | A | clone | - | 3270952 | AT5G10400.1 |
TSS clone | T | clone | - | 3270951 | AT5G10400.1 |
TSS clone | A | clone | - | 3270948 | AT5G10400.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTACGTGGAC | - | 3269799 | 3269808 | AT5G10390.1 | ||||
AtREG495 | CTACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |