PlantPromoterDB promoter information of AT5G10380.1
Summary of Gene (AT5G10380.1)
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Overview
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Focused view (chromosome 5: 3270169-3271368)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G10380.1 5'->3' (+) Promoter sequence AT5G10400.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G10380.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 28 | + | 3267706 | -113 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 3266846 | -973 |
| TSS clone | T | clone | + | 3267636 | -183 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCTTTAA | + | 3267480 | 3267487 | -339 | -332 | |||
| AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | - | 3270952 | AT5G10400.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | - | 3270954 | AT5G10400.1 |
| TSS clone | A | clone | - | 3270952 | AT5G10400.1 |
| TSS clone | T | clone | - | 3270951 | AT5G10400.1 |
| TSS clone | A | clone | - | 3270948 | AT5G10400.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAAA | - | 3270979 | 3270986 | AT5G10400.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CTTATTGG | - | 3271092 | 3271099 | AT5G10400.1 | ||||
| AtREG611 | CTTATTGG | PPDB Motif | PLACE Motif | ||||||
| REG | ATGACGTGGAT | - | 3271115 | 3271125 | AT5G10400.1 | ||||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||